Preprint Epublish 15 citations
PubMed: 38562748 DOI: 10.1101/2024.03.20.585998
Analysis and culturing of the prototypic crAssphage reveals a phage-plasmid lifestyle.
bioRxiv
Authors: Danica T Schmidtke, Angela S Hickey, Ivan Liachko, Gavin Sherlock, Ami S Bhatt
Affiliations
- Department of Microbiology and Immunology, Stanford University, Stanford, CA, USA.
- Department of Genetics, Stanford University, Stanford, CA, USA.
- Phase Genomics, Seattle, WA, USA.
- Senior author.
- Department of Medicine (Division of Hematology), Stanford University, Stanford, CA, USA.
- Lead corresponding author.
Abstract
The prototypic crAssphage () is one of the most abundant, prevalent, and persistent gut bacteriophages, yet it remains uncultured and its lifestyle uncharacterized. For the last decade, crAssphage has escaped plaque-dependent culturing efforts, leading us to investigate alternative lifestyles that might explain its widespread success. Through genomic analyses and culturing, we find that crAssphage uses a phage-plasmid lifestyle to persist extrachromosomally. Plasmid-related genes are more highly expressed than those implicated in phage maintenance. Leveraging this finding, we use a plaque-free culturing approach to measure crAssphage replication in culture with and , revealing a broad host range. We demonstrate that crAssphage persists with its hosts in culture without causing major cell lysis events or integrating into host chromosomes. The ability to switch between phage and plasmid lifestyles within a wide range of hosts contributes to the prolific nature of crAssphage in the human gut microbiome.
MeSH
Plasmids, Bacteriophages, Life Style