Publications

Journal Article Research Support, Non-U.S. Gov't Ppublish 3 citations

PubMed: 39405087 DOI: 10.1021/acs.analchem.4c01096

Nucleic Acid-Rich Stress Granules Are Not Merely Crowded Condensates: A Quantitative Raman Imaging Study.

Anal Chem 96(43):17078-17085

Authors: Ren Shibuya, Shinji Kajimoto, Hideyuki Yaginuma, Tetsuro Ariyoshi, Yasushi Okada, Takakazu Nakabayashi

Affiliations

  • Graduate School of Pharmaceutical Sciences, Tohoku University, Aoba-ku, Sendai 980-8578, Japan.
  • JST PRESTO, Kawaguchi, Saitama 332-0012, Japan.
  • Department of Cell Biology and Physics, Universal Biology Institute and International Research Center for Neurointelligence, The University of Tokyo, Bunkyo-ku, Tokyo 113-0033, Japan.
  • Laboratory for Cell Polarity Regulation, RIKEN Center for Biosystems Dynamics Research, Suita, Osaka 565-0874, Japan.
  • Department of Cell Biology and Physics, Universal Biology Institute and International Research Center for Neurointelligence, The University of Tokyo, Bunkyo-ku, Tokyo 113-0033, Japan. Laboratory for Cell Polarity Regulation, RIKEN Center for Biosystems Dynamics Research, Suita, Osaka 565-0874, Japan.

Abstract

Liquid droplets, formed by intracellular liquid-liquid phase separation (LLPS), are called membraneless organelles. They provide transient enzymatic reaction fields for maintaining cellular homeostasis, although they might transform into aggregates, leading to neurodegenerative diseases. To understand the nature of intracellular droplets, it is crucial to quantify the liquid droplets inside a living cell as well as to elucidate the underlying biological mechanism. In this study, we performed near-infrared fluorescence and Raman imaging to quantify chemical components inside stress granules (SGs) formed by LLPS in living cells. The Raman images reveal that the nucleic acid concentration inside the SGs was more than 20% higher than the surrounding cytoplasm, whereas the lipid concentration was lower. Quantitative Raman intensity analysis using a water Raman band as an internal standard enables concentration determination of nucleic acids in the SGs and other organelles. The intensity of the biomolecular C-H bands relative to the water band indicates that the crowding environment inside the SGs depends on the stress type; under oxidative stress, the inside of the SGs was nearly identical to the outside, whereas it was sparser in hyperosmotic stressed cells, suggesting that the high concentrations of nucleic acids play a pivotal role in maintaining the environments inside the SGs. These results demonstrate that intracellular droplets are not always highly condensed.

MeSH

Organelles, Cells, Stress, Physiological, Nucleic Acids, Environment

Cited by